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oprF_1 protein (Yersinia pseudotuberculosis) - STRING interaction network
"oprF_1" - OmpA domain-containing protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprF_1OmpA domain-containing protein; IV_VI_DotU- type IV/VI secretion system , DotU family domain protein (543 aa)    
Predicted Functional Partners:
DJ40_1713
annotation not available (1164 aa)
 
   
  0.971
DJ40_1715
OmpA domain-containing protein (451 aa)
 
   
  0.966
pipB2
annotation not available (739 aa)
 
          0.890
cheA
annotation not available (718 aa)
   
   
  0.877
DJ40_1721
vgr_GE- Rhs element Vgr family protein (782 aa)
 
   
  0.874
DJ40_1717
DUF4150 domain-containing protein (121 aa)
 
          0.869
DJ40_1724
Type VI secretion protein (614 aa)
 
   
  0.866
yiaD_2
OmpA domain-containing protein; type_VI_ompA- type VI secretion system OmpA/MotB family protein (458 aa)
 
   
 
0.861
DJ40_1723
Type VI secretion protein (327 aa)
 
   
  0.860
DJ40_1725
annotation not available (147 aa)
 
   
  0.860
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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