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DJ40_1728 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_1728" - Type VI secretion system contractile sheath small subunit in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_1728Type VI secretion system contractile sheath small subunit (186 aa)    
Predicted Functional Partners:
DJ40_1727
EvpB family type VI secretion protein (500 aa)
 
  0.982
DJ40_1729
impA-related N-terminal family protein (328 aa)
 
   
  0.950
hcp1_1
Hcp1 family type VI secretion system effector (172 aa)
 
      0.921
DJ40_3878
Type VI secretion system contractile sheath large subunit (500 aa)
 
  0.894
DJ40_3887
annotation not available (268 aa)
 
 
  0.870
DJ40_1724
Type VI secretion protein (614 aa)
 
   
  0.859
hcp1_2
VI_effect_Hcp1- type VI secretion system effector, Hcp1 family protein (161 aa)
 
      0.855
DJ40_1723
Type VI secretion protein (327 aa)
 
   
  0.856
DJ40_1721
vgr_GE- Rhs element Vgr family protein (782 aa)
 
   
  0.836
DJ40_3870
Type VI secretion protein (341 aa)
 
   
  0.822
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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