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DJ40_1779 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_1779" - Protein YfiR in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_1779Protein YfiR (207 aa)    
Predicted Functional Partners:
yfiN
GGDEF- diguanylate cyclase domain protein (433 aa)
 
   
  0.984
yiaD_1
annotation not available (168 aa)
 
 
  0.975
DJ40_807
comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2 (763 aa)
     
        0.768
DJ40_839
Putative virulence factor (315 aa)
   
          0.540
yjjK
Energy-dependent translational throttle protein EttA; ccmA- heme ABC exporter, ATP-binding protein CcmA (555 aa)
              0.480
DJ40_1283
annotation not available (278 aa)
   
          0.473
gspI
annotation not available (96 aa)
   
          0.435
ydgC
annotation not available (113 aa)
   
          0.429
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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