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yfiN protein (Yersinia pseudotuberculosis) - STRING interaction network
"yfiN" - GGDEF: diguanylate cyclase domain protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiNGGDEF- diguanylate cyclase domain protein (433 aa)    
Predicted Functional Partners:
DJ40_1779
Protein YfiR (207 aa)
 
   
  0.984
yiaD_1
annotation not available (168 aa)
 
   
  0.960
ycgG
annotation not available (526 aa)
 
  0.881
barA
annotation not available (939 aa)
 
 
  0.728
pgaC
pgaC_IcaA- poly-beta-1,6 N-acetyl-D-glucosamine synthase (444 aa)
 
     
  0.695
pgaA
Outer membrane protein; PGA_TPR_OMP- poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (822 aa)
   
 
 
  0.688
thrC
thrC- threonine synthase (429 aa)
           
  0.641
yhjH
annotation not available (281 aa)
 
 
  0.626
pal
Pal_lipo- peptidoglycan-associated lipoprotein; Belongs to the ompA family (168 aa)
           
  0.619
cph2
GGDEF- diguanylate cyclase domain protein (855 aa)
 
 
0.594
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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