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yciC protein (Yersinia pseudotuberculosis) - STRING interaction network
"yciC" - UPF0259 membrane protein ERS008480_00738 in Yersinia pseudotuberculosis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciCUPF0259 membrane protein ERS008480_00738 (256 aa)    
Predicted Functional Partners:
lpoB
Penicillin-binding protein activator LpoB; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) (191 aa)
   
          0.723
DJ40_2341
Protein of uncharacterised function (DUF1454) (211 aa)
   
          0.689
ompC2
annotation not available (371 aa)
   
          0.687
ompN
annotation not available (359 aa)
   
          0.685
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The exact function of the psi subunit is unknown (145 aa)
   
          0.679
dsrH
Protein TusB; Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions (95 aa)
   
          0.677
holB
holB- DNA polymerase III, delta’ subunit (340 aa)
   
          0.670
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence (311 aa)
   
          0.663
ompD
OMP85_target- outer membrane insertion C-terminal signal domain protein (360 aa)
   
          0.661
ompC
annotation not available (371 aa)
   
          0.636
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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