STRINGSTRING
yhbE protein (Yersinia pseudotuberculosis) - STRING interaction network
"yhbE" - Integral membrane protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbEIntegral membrane protein (328 aa)    
Predicted Functional Partners:
rpmA
L27- ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (85 aa)
   
        0.633
cgtA
GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family (390 aa)
   
      0.620
DJ40_799
Fructosamine-3-kinase (297 aa)
   
        0.594
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
   
        0.585
DJ40_1937
annotation not available (406 aa)
              0.499
DJ40_1936
annotation not available (261 aa)
              0.499
DJ40_847
annotation not available (335 aa)
   
        0.461
DJ40_607
Protein of uncharacterised function (DUF2766) (79 aa)
   
          0.457
DJ40_2340
Predicted membrane protein (115 aa)
   
          0.428
nlpE
annotation not available (227 aa)
   
          0.412
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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