STRINGSTRING
yjdC protein (Yersinia pseudotuberculosis) - STRING interaction network
"yjdC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjdCannotation not available (191 aa)    
Predicted Functional Partners:
panZ
PanD regulatory factor; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion (130 aa)
   
          0.710
DJ40_926
annotation not available (114 aa)
   
          0.700
DJ40_560
Putative periplasmic or exported protein (113 aa)
   
          0.664
wzzE
ECA polysaccharide chain length modulation protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family (339 aa)
   
          0.628
xerC
recomb_XerC- tyrosine recombinase XerC; Belongs to the ’phage’ integrase family. XerC subfamily (303 aa)
     
   
  0.602
topB
DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (641 aa)
           
  0.599
ydgH
annotation not available (317 aa)
   
          0.596
aat
Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine (236 aa)
           
  0.592
DJ40_2341
Protein of uncharacterised function (DUF1454) (211 aa)
   
          0.588
DJ40_1787
annotation not available (233 aa)
   
          0.578
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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