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prgK protein (Yersinia pseudotuberculosis) - STRING interaction network
"prgK" - Lipoprotein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prgKLipoprotein; III_secr_YscJ- type III secretion apparatus lipoprotein, YscJ/HrcJ family (243 aa)    
Predicted Functional Partners:
invG
type_III_yscC- type III secretion outer membrane pore, YscC/HrcC family (499 aa)
 
 
  0.976
escU
annotation not available (355 aa)
 
   
  0.943
epaR
fliR_like_III- type III secretion apparatus protein SpaR/YscT/HrcT (264 aa)
 
   
  0.938
flhA1
Secretion system apparatus protein SsaV; hrcV- type III secretion , HrcV family protein (682 aa)
 
   
  0.932
DJ40_2094
type_III_yscD- type III secretion apparatus protein, YscD/HrpQ family (404 aa)
 
   
  0.912
epaO
spaO_YscQ- type III secretion apparatus protein, YscQ/HrcQ family (320 aa)
 
   
  0.901
epaP
yscR- type III secretion apparatus protein, YscR/HrcR family (218 aa)
 
   
  0.864
DJ40_2089
yscI_hrpB_dom- type III secretion apparatus protein, YscI/HrpB, C-terminal domain (83 aa)
              0.845
DJ40_2090
Putative type III secretion apparatus (82 aa)
   
        0.825
yscN
annotation not available (445 aa)
 
   
  0.817
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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