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DJ40_2093 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_2093" - Putative type III secretion apparatus in Yersinia pseudotuberculosis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_2093Putative type III secretion apparatus (73 aa)    
Predicted Functional Partners:
invG
type_III_yscC- type III secretion outer membrane pore, YscC/HrcC family (499 aa)
              0.801
DJ40_2094
type_III_yscD- type III secretion apparatus protein, YscD/HrpQ family (404 aa)
              0.801
rhaR_1
annotation not available (235 aa)
              0.565
eprI
III_needle- type III secretion apparatus needle protein (71 aa)
              0.565
DJ40_2090
Putative type III secretion apparatus (82 aa)
              0.565
torS
annotation not available (939 aa)
              0.452
nreC
annotation not available (210 aa)
              0.442
DJ40_2089
yscI_hrpB_dom- type III secretion apparatus protein, YscI/HrpB, C-terminal domain (83 aa)
              0.404
prgK
Lipoprotein; III_secr_YscJ- type III secretion apparatus lipoprotein, YscJ/HrcJ family (243 aa)
              0.404
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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