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DJ40_2113 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_2113" - Lipoprotein in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_2113Lipoprotein (217 aa)    
Predicted Functional Partners:
DJ40_2115
Protein of uncharacterised function (DUF416) (196 aa)
            0.856
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3’ to a deoxyinosine leaving behind the intact lesion on the nicked DNA (234 aa)
            0.820
hupA
Transcriptional regulator HU subunit alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions (91 aa)
            0.795
yfeY
RpoE-regulated lipoprotein (203 aa)
   
          0.769
DJ40_2471
Putative lipoprotein (112 aa)
   
          0.763
DJ40_61
annotation not available (904 aa)
   
          0.753
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate (268 aa)
   
          0.734
DJ40_3670
annotation not available (355 aa)
   
          0.716
DJ40_926
annotation not available (114 aa)
   
          0.714
secM
Secretion monitor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation (177 aa)
   
          0.709
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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