STRINGSTRING
livH protein (Yersinia pseudotuberculosis) - STRING interaction network
"livH" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livHannotation not available (308 aa)    
Predicted Functional Partners:
livM
annotation not available (428 aa)
 
  0.999
livK
annotation not available (371 aa)
 
  0.998
livG
annotation not available (255 aa)
 
  0.997
livF
annotation not available (233 aa)
 
  0.995
urtC
Branched chain amino acid ABC transporter permease; urea_trans_UrtC- urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family (358 aa)
   
  0.898
urtE
urea_trans_UrtE- urea ABC transporter, ATP-binding protein UrtE (232 aa)
   
  0.556
livF_1
annotation not available (236 aa)
   
  0.457
livK1
annotation not available (422 aa)
   
   
  0.453
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (959 aa)
         
  0.441
urtD
urea_trans_UrtD- urea ABC transporter, ATP-binding protein UrtD (278 aa)
     
  0.420
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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