STRINGSTRING
xerC protein (Yersinia pseudotuberculosis) - STRING interaction network
"xerC" - recomb_XerC: tyrosine recombinase XerC in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCrecomb_XerC- tyrosine recombinase XerC; Belongs to the ’phage’ integrase family. XerC subfamily (303 aa)    
Predicted Functional Partners:
DJ40_2229
Uncharacterized protein conserved in bacteria (234 aa)
 
        0.942
yfnB
Flavin mononucleotide phosphatase; HAD-SF-IA-v1- HAD hydrolase, IA, variant 1 family protein (238 aa)
   
        0.916
ftsK
annotation not available (1309 aa)
   
 
  0.882
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (274 aa)
   
   
  0.820
xerD
recomb_XerD- tyrosine recombinase XerD (299 aa)
   
 
0.682
uvrD
uvrD- DNA helicase II (720 aa)
   
   
  0.645
DJ40_431
annotation not available (335 aa)
   
     
  0.634
topB
DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (641 aa)
       
 
  0.626
yjdC
annotation not available (191 aa)
     
   
  0.602
umuD
annotation not available (139 aa)
           
  0.593
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (10%) [HD]