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focC_1 protein (Yersinia pseudotuberculosis) - STRING interaction network
"focC_1" - Pili assembly chaperone PapD, C-terminal domain protein in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
focC_1Pili assembly chaperone PapD, C-terminal domain protein (272 aa)    
Predicted Functional Partners:
DJ40_2267
annotation not available (425 aa)
 
 
  0.987
sfaA
annotation not available (176 aa)
 
 
  0.947
fimD
Fimbrial usher protein; papC N-terminal domain protein (883 aa)
      0.924
fim
annotation not available (176 aa)
 
 
  0.914
fimC_1
Chaperone; Pili assembly chaperone PapD, C-terminal domain protein (243 aa)
 
   
0.878
DJ40_398
annotation not available (425 aa)
 
 
  0.868
htrE_2
Putative outer membrane usher protein; papC N-terminal domain protein (870 aa)
      0.844
htrE_4
Fimbrial usher protein; papC N-terminal domain protein (863 aa)
      0.844
htrE_1
Outer membrane fimbrial usher porin; papC N-terminal domain protein (890 aa)
      0.844
caf1A
annotation not available (817 aa)
      0.842
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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