STRINGSTRING
ligB protein (Yersinia pseudotuberculosis) - STRING interaction network
"ligB" - DNA ligase B in Yersinia pseudotuberculosis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
ligBDNA ligase B; Catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction (567 aa)    
Predicted Functional Partners:
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily (670 aa)
   
 
0.885
nifJ
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1177 aa)
     
 
  0.719
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (932 aa)
 
   
  0.676
fhaB_2
annotation not available (747 aa)
   
     
  0.641
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source (540 aa)
   
   
  0.630
DJ40_3104
Flagellin; Bacterial flagellin C-terminal helical region family protein (398 aa)
           
  0.605
DJ40_640
annotation not available (1075 aa)
           
  0.596
DJ40_554
annotation not available (969 aa)
           
  0.596
DJ40_2960
Adhesin; adhes_NPXG- filamentous hemagglutinin family N-terminal domain protein (2750 aa)
           
  0.592
rscA
Adhesin; adhes_NPXG- filamentous hemagglutinin family N-terminal domain protein (1912 aa)
           
  0.592
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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