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DJ40_25 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_25" - YjbD family in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_25YjbD family (DUF3811) (87 aa)    
Predicted Functional Partners:
DJ40_3838
Protein of uncharacterised function (DUF2502) (104 aa)
   
          0.659
feoC
Probable [Fe-S]-dependent transcriptional repressor; May function as a transcriptional regulator that controls feoABC expression (85 aa)
   
          0.622
DJ40_153
annotation not available (71 aa)
   
          0.615
nlpE
annotation not available (227 aa)
   
          0.606
capB
annotation not available (159 aa)
   
          0.583
thiS
thiS- thiamine biosynthesis protein ThiS (71 aa)
   
          0.506
DJ40_607
Protein of uncharacterised function (DUF2766) (79 aa)
   
          0.487
DJ40_3536
Protein of uncharacterised function (DUF1198) (149 aa)
   
          0.485
yohC
annotation not available (196 aa)
              0.441
gst
annotation not available (201 aa)
              0.435
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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