STRINGSTRING
mdfA protein (Yersinia pseudotuberculosis) - STRING interaction network
"mdfA" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdfAannotation not available (409 aa)    
Predicted Functional Partners:
cat2
4-hydroxybutyrate CoA-transferase; acetyl-CoA hydrolase/transferase N-terminal domain protein (386 aa)
     
   
  0.600
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate; Belongs to the gamma-glutamyl phosphate reductase family (419 aa)
         
  0.593
hsdM
hsdM- type I restriction-modification system, M subunit (863 aa)
           
  0.593
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the LeuD family. LeuD type 1 subfamily (200 aa)
           
  0.592
lacZ
annotation not available (1066 aa)
           
  0.591
DJ40_431
annotation not available (335 aa)
           
  0.590
intS_4
annotation not available (402 aa)
           
  0.590
DJ40_554
annotation not available (969 aa)
   
     
  0.582
intB
annotation not available (422 aa)
           
  0.582
pla
annotation not available (311 aa)
   
     
  0.502
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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