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xylF protein (Yersinia pseudotuberculosis) - STRING interaction network
xylF: D-xylose ABC transporter, D-xylose-binding protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylFxylF- D-xylose ABC transporter, D-xylose-binding protein (331 aa)    
Predicted Functional Partners:
xylH
annotation not available (394 aa)
 
  0.989
xylG
Xylose import ATP-binding protein XylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family (510 aa)
 
  0.968
btr
annotation not available (397 aa)
 
     
  0.885
xylA
xylose_isom_A- xylose isomerase; Belongs to the xylose isomerase family (439 aa)
 
 
  0.868
DJ40_2514
xylB- xylulokinase (484 aa)
 
     
  0.743
xylB1
xylB- xylulokinase; Belongs to the FGGY kinase family (517 aa)
 
     
  0.516
araF
annotation not available (327 aa)
 
   
  0.459
yjfF
annotation not available (330 aa)
          0.455
ytfT
annotation not available (332 aa)
          0.446
fruA
PTS system fructose-specific transporter subunit IIBC; FRU- PTS system, Fru family, IIB component domain protein (566 aa)
           
  0.432
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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