STRINGSTRING
kdgM1 protein (Yersinia pseudotuberculosis) - STRING interaction network
"kdgM1" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgM1annotation not available (234 aa)    
Predicted Functional Partners:
pelY
annotation not available (572 aa)
 
     
  0.878
ogl
annotation not available (388 aa)
   
   
  0.822
DJ40_4215
annotation not available (555 aa)
 
     
  0.799
yesO
annotation not available (430 aa)
   
          0.748
melB1
annotation not available (508 aa)
   
      0.679
lptE
LPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane (207 aa)
     
 
  0.586
pulS
annotation not available (121 aa)
   
          0.581
DJ40_2102
annotation not available (385 aa)
   
          0.580
DJ40_681
annotation not available (411 aa)
   
          0.531
DJ40_2561
annotation not available (159 aa)
 
          0.513
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (15%) [HD]