STRINGSTRING
uspB protein (Yersinia pseudotuberculosis) - STRING interaction network
"uspB" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspBannotation not available (111 aa)    
Predicted Functional Partners:
DJ40_232
annotation not available (511 aa)
     
        0.718
DJ40_1955
Protein of uncharacterised function (DUF1107) (70 aa)
   
        0.701
uspA
annotation not available (148 aa)
 
   
  0.668
helD
annotation not available (684 aa)
   
          0.663
yohC
annotation not available (196 aa)
     
        0.649
pla
annotation not available (311 aa)
   
     
  0.640
sodC
annotation not available (201 aa)
     
   
  0.634
DJ40_3722
Uncharacterized conserved protein (112 aa)
     
        0.630
DJ40_1974
Putative inner membrane protein YjeT (Clustered with HflC) (82 aa)
   
          0.620
DJ40_2204
annotation not available (208 aa)
   
        0.618
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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