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ompR_2 protein (Yersinia pseudotuberculosis) - STRING interaction network
"ompR_2" - Transcriptional regulatory , C terminal family protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompR_2Transcriptional regulatory , C terminal family protein (245 aa)    
Predicted Functional Partners:
DJ40_2587
annotation not available (851 aa)
 
  0.913
barA
annotation not available (939 aa)
 
 
0.817
torS
annotation not available (939 aa)
 
  0.801
arcB
annotation not available (778 aa)
 
 
  0.762
envZ
annotation not available (450 aa)
 
 
 
  0.705
cheA
annotation not available (718 aa)
   
 
  0.703
ydjH_2
annotation not available (335 aa)
   
          0.660
rcsC_2
annotation not available (514 aa)
 
  0.637
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (750 aa)
           
  0.594
adrA
PAS/PAC domain-containing protein; GGDEF- diguanylate cyclase domain protein (693 aa)
   
 
  0.584
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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