STRINGSTRING
yohC protein (Yersinia pseudotuberculosis) - STRING interaction network
"yohC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yohCannotation not available (196 aa)    
Predicted Functional Partners:
DJ40_232
annotation not available (511 aa)
     
        0.666
uspB
annotation not available (111 aa)
     
        0.649
rsd
Regulator of sigma D; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase (169 aa)
   
        0.603
DJ40_63
Uncharacterized protein conserved in bacteria (101 aa)
   
        0.487
psiF
annotation not available (111 aa)
   
        0.445
DJ40_2625
annotation not available (89 aa)
   
          0.445
DJ40_25
YjbD family (DUF3811) (87 aa)
              0.441
dtpA
Dipeptide and tripeptide permease A; Proton-dependent permease that transports di- and tripeptides (501 aa)
              0.436
tqsA
Putative transport protein (352 aa)
   
        0.433
DJ40_3535
Protein of uncharacterised function (DUF2002) (111 aa)
   
          0.423
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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