STRINGSTRING
DJ40_2623 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_2623" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_2623annotation not available (233 aa)    
Predicted Functional Partners:
DJ40_807
comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2 (763 aa)
 
   
  0.845
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins (191 aa)
   
        0.817
comM
annotation not available (507 aa)
 
   
  0.793
bioH
Pimeloyl-[acyl-carrier protein] methyl ester esterase; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters (258 aa)
   
        0.716
DJ40_2926
UPF0102 protein ERS008480_02126; Belongs to the UPF0102 family (117 aa)
 
        0.556
radC
UPF0758 protein ERS008480_02678; Radc- DNA repair RadC family protein; Belongs to the UPF0758 family. YicR subfamily (222 aa)
 
        0.556
ykfG_2
RadC family DNA repair protein; Belongs to the UPF0758 family (157 aa)
 
        0.519
DJ40_1240
Conserved hypothetical protein (136 aa)
 
        0.509
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (635 aa)
 
        0.472
DJ40_1394
annotation not available (148 aa)
         
  0.461
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
Server load: low (11%) [HD]