STRINGSTRING
bfd protein (Yersinia pseudotuberculosis) - STRING interaction network
"bfd" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfdannotation not available (64 aa)    
Predicted Functional Partners:
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (157 aa)
 
 
 
  0.872
DJ40_621
annotation not available (246 aa)
     
   
  0.700
DJ40_2306
tonB_Cterm- TonB family C-terminal domain protein (267 aa)
 
   
  0.546
fhuF
Ferric hydroximate transport ferric iron reductase; fe_III_red_FhuF- siderophore-iron reductase FhuF (259 aa)
   
   
  0.543
tufA_1
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (394 aa)
              0.521
tonB
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (252 aa)
   
   
  0.492
mbtB_1
Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein (1909 aa)
     
   
  0.466
DJ40_869
Protein of uncharacterised function (DUF1418) (104 aa)
   
          0.457
fpr_1
Bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; PTS_HPr_- phosphocarrier, HPr family protein (377 aa)
           
  0.450
hemP
annotation not available (63 aa)
   
   
  0.416
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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