STRINGSTRING
shlA protein (Yersinia pseudotuberculosis) - STRING interaction network
"shlA" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shlAannotation not available (1423 aa)    
Predicted Functional Partners:
estA
Autotrans_barl- outer membrane autotransporter barrel domain protein (728 aa)
 
     
  0.817
DJ40_3292
annotation not available (3103 aa)
 
     
  0.739
DJ40_1900
annotation not available (103 aa)
   
          0.735
DJ40_1901
Phage-related protein (122 aa)
   
          0.731
DJ40_2606
annotation not available (5813 aa)
 
     
  0.726
DJ40_2213
annotation not available (393 aa)
 
     
  0.719
tps_1
annotation not available (806 aa)
   
          0.718
DJ40_11
Rhs_assc_core- RHS repeat-associated core domain protein (982 aa)
 
          0.692
DJ40_1005
Uncharacterized protein (285 aa)
   
          0.682
yadA_2
Hemagluttinin domain-containing protein; yadA-like C-terminal region family protein (615 aa)
 
     
  0.674
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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