STRINGSTRING
yecM protein (Yersinia pseudotuberculosis) - STRING interaction network
"yecM" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecMannotation not available (191 aa)    
Predicted Functional Partners:
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5’- ACTAGT-’3’) and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region (130 aa)
   
          0.740
cpxP
annotation not available (162 aa)
   
          0.588
yciS
Lipopolysaccharide assembly protein A; Involved in the assembly of lipopolysaccharide (LPS) (103 aa)
   
          0.583
yejL
UPF0352 protein ERS008480_00440; Belongs to the UPF0352 family (75 aa)
   
          0.574
DJ40_1403
Lipoprotein YajG (192 aa)
   
        0.567
sprT
annotation not available (170 aa)
   
          0.540
DJ40_311
Protein of uncharacterised function (DUF2583) (90 aa)
   
          0.513
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2’-deoxycytidine for UMP synthesis (294 aa)
   
          0.510
DJ40_926
annotation not available (114 aa)
   
          0.493
DJ40_4269
Lactate dehydrogenase; FAD linked oxidase, C-terminal domain protein (1018 aa)
           
  0.480
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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