STRINGSTRING
csrD protein (Yersinia pseudotuberculosis) - STRING interaction network
"csrD" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csrDannotation not available (638 aa)    
Predicted Functional Partners:
barA
annotation not available (939 aa)
 
 
  0.958
csrA
Carbon storage regulator homolog; Could accelerate the degradation of some genes transcripts potentially through selective RNA binding (61 aa)
           
  0.856
cph2
GGDEF- diguanylate cyclase domain protein (855 aa)
 
 
 
  0.838
adrA
PAS/PAC domain-containing protein; GGDEF- diguanylate cyclase domain protein (693 aa)
   
 
  0.823
dosC
HmsT protein; GGDEF- diguanylate cyclase domain protein (384 aa)
 
 
  0.799
ycgG
annotation not available (526 aa)
 
 
  0.770
arcB
annotation not available (778 aa)
 
 
  0.768
DJ40_2587
annotation not available (851 aa)
   
 
  0.754
rcsD
Phosphotransferase RcsD; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB (897 aa)
 
 
  0.741
torS
annotation not available (939 aa)
   
 
  0.736
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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