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yhdE protein (Yersinia pseudotuberculosis) - STRING interaction network
"yhdE" - Maf-like protein ERS008480_02778 in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhdEMaf-like protein ERS008480_02778; Maf- septum formation protein Maf (197 aa)    
Predicted Functional Partners:
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins (162 aa)
 
   
  0.978
rng
annotation not available (489 aa)
 
   
  0.922
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape (331 aa)
   
   
  0.886
mreB
annotation not available (347 aa)
   
   
  0.667
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (705 aa)
        0.599
DJ40_2874
annotation not available (101 aa)
            0.569
yeeX
UPF0265 protein ERS008480_01140; Belongs to the UPF0265 family (105 aa)
           
  0.479
yjgA
UPF0307 protein ERS008480_02079; Belongs to the UPF0307 family (182 aa)
           
  0.479
DJ40_2856
annotation not available (289 aa)
            0.447
tldD
annotation not available (481 aa)
 
        0.439
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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