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DJ40_2949 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_2949" - Autotrans_barl: outer membrane autotransporter barrel domain protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_2949Autotrans_barl- outer membrane autotransporter barrel domain protein (1000 aa)    
Predicted Functional Partners:
yapB2
Pertactin family virulence factor/autotransporter; Autotrans_barl- outer membrane autotransporter barrel domain protein (836 aa)
   
     
  0.804
DJ40_3069
annotation not available (367 aa)
   
      0.773
DJ40_2606
annotation not available (5813 aa)
   
     
  0.768
DJ40_4202
annotation not available (387 aa)
   
      0.767
DJ40_3292
annotation not available (3103 aa)
   
     
  0.756
DJ40_2213
annotation not available (393 aa)
 
     
  0.750
yadA_2
Hemagluttinin domain-containing protein; yadA-like C-terminal region family protein (615 aa)
   
          0.743
DJ40_820
annotation not available (224 aa)
   
          0.739
DJ40_727
annotation not available (501 aa)
   
          0.738
DJ40_3194
annotation not available (765 aa)
   
          0.725
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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