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DJ40_3023 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_3023" - UPF0441 protein ERS008480_03315 in Yersinia pseudotuberculosis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_3023UPF0441 protein ERS008480_03315; Belongs to the UPF0441 family (227 aa)    
Predicted Functional Partners:
gsp
annotation not available (386 aa)
 
      0.974
nlpB
Outer membrane protein assembly factor BamC; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (352 aa)
   
          0.614
DJ40_3024
Uncharacterized protein (56 aa)
              0.609
ydgH
annotation not available (317 aa)
   
          0.594
wzzE
ECA polysaccharide chain length modulation protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family (339 aa)
   
          0.578
ymoA
annotation not available (67 aa)
   
          0.576
wzyE
Probable ECA polymerase; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family (454 aa)
   
          0.502
DJ40_2341
Protein of uncharacterised function (DUF1454) (211 aa)
   
          0.498
yciC
UPF0259 membrane protein ERS008480_00738 (256 aa)
   
          0.495
DJ40_61
annotation not available (904 aa)
   
          0.485
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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