STRINGSTRING
papD protein (Yersinia pseudotuberculosis) - STRING interaction network
"papD" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
papDannotation not available (239 aa)    
Predicted Functional Partners:
papC
annotation not available (826 aa)
 
  0.985
fimA
annotation not available (180 aa)
   
 
  0.883
DJ40_3066
annotation not available (176 aa)
 
      0.881
fimD
Fimbrial usher protein; papC N-terminal domain protein (883 aa)
 
  0.844
yqiG
Outer membrane fimbrial usher porin; papC N-terminal domain protein (819 aa)
      0.832
caf1A
annotation not available (817 aa)
      0.820
htrE_1
Outer membrane fimbrial usher porin; papC N-terminal domain protein (890 aa)
      0.817
htrE_2
Putative outer membrane usher protein; papC N-terminal domain protein (870 aa)
      0.815
smfA_1
annotation not available (176 aa)
   
      0.812
htrE_4
Fimbrial usher protein; papC N-terminal domain protein (863 aa)
      0.808
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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