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sapD protein (Yersinia pseudotuberculosis) - STRING interaction network
"sapD" - oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapDoligo_HPY- oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein; Belongs to the ABC transporter superfamily (330 aa)    
Predicted Functional Partners:
sapC
annotation not available (296 aa)
  0.996
sapB
annotation not available (321 aa)
  0.994
dppA_1
annotation not available (547 aa)
 
  0.993
sapF
annotation not available (271 aa)
 
   
0.978
oppF
oligo_HPY- oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein; Belongs to the ABC transporter superfamily (333 aa)
 
   
0.921
dppC
annotation not available (300 aa)
 
  0.813
ddpC_2
annotation not available (278 aa)
 
  0.802
dppB
annotation not available (339 aa)
 
  0.798
oppC
annotation not available (301 aa)
 
  0.735
ddpB
annotation not available (349 aa)
 
  0.730
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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