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icsA_4 protein (Yersinia pseudotuberculosis) - STRING interaction network
"icsA_4" - Autotrans_barl: outer membrane autotransporter barrel domain protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icsA_4Autotrans_barl- outer membrane autotransporter barrel domain protein (1256 aa)    
Predicted Functional Partners:
DJ40_3069
annotation not available (367 aa)
   
      0.748
DJ40_2606
annotation not available (5813 aa)
   
     
  0.746
DJ40_820
annotation not available (224 aa)
   
          0.742
DJ40_4202
annotation not available (387 aa)
   
      0.737
DJ40_4020
Uncharacterized protein (176 aa)
   
          0.730
DJ40_3292
annotation not available (3103 aa)
   
     
  0.729
DJ40_2213
annotation not available (393 aa)
 
     
  0.714
tadG
annotation not available (518 aa)
   
          0.697
yadA_2
Hemagluttinin domain-containing protein; yadA-like C-terminal region family protein (615 aa)
   
          0.693
DJ40_1730
DUF2285 domain-containing protein (247 aa)
   
          0.691
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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