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DJ40_3254 protein (Yersinia pseudotuberculosis) - STRING interaction network
"DJ40_3254" - Rhs element Vgr protein in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ40_3254Rhs element Vgr protein (779 aa)    
Predicted Functional Partners:
clpV1_4
VI_ClpV1- type VI secretion ATPase, ClpV1 family (882 aa)
 
   
  0.944
DJ40_3249
Type VI secretion protein (450 aa)
 
   
  0.897
DJ40_3250
Membrane protein; IV_VI_DotU- type IV/VI secretion system , DotU family domain protein (228 aa)
 
        0.894
DJ40_3252
VI_effect_Hcp1- type VI secretion system effector, Hcp1 family protein (163 aa)
 
     
  0.884
oprF_2
annotation not available (571 aa)
 
          0.876
DJ40_3256
Uncharacterized protein (1021 aa)
 
          0.873
DJ40_3247
Type VI secretion system contractile sheath small subunit (166 aa)
 
     
  0.867
DJ40_3248
EvpB family type VI secretion protein (519 aa)
 
     
  0.855
DJ40_3255
annotation not available (314 aa)
              0.826
DJ40_3260
annotation not available (1140 aa)
 
   
  0.817
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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