STRINGSTRING
speC protein (Yersinia pseudotuberculosis) - STRING interaction network
"speC" - annotation not available in Yersinia pseudotuberculosis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speCannotation not available (720 aa)    
Predicted Functional Partners:
speE
Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine (296 aa)
     
  0.927
aguB
Putative carbon-nitrogen hydrolase; agmatine_aguB- N-carbamoylputrescine amidase (294 aa)
   
 
  0.913
speG
annotation not available (181 aa)
         
  0.911
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine (659 aa)
           
  0.604
pgaA
Outer membrane protein; PGA_TPR_OMP- poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (822 aa)
     
   
  0.597
doc
annotation not available (124 aa)
           
  0.592
pgaC
pgaC_IcaA- poly-beta-1,6 N-acetyl-D-glucosamine synthase (444 aa)
           
  0.592
adiC
annotation not available (444 aa)
 
  0.509
ravA
ATPase RavA; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone (507 aa)
       
 
  0.459
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily (631 aa)
           
  0.400
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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