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xerD protein (Yersinia pseudotuberculosis) - STRING interaction network
"xerD" - recomb_XerD: tyrosine recombinase XerD in Yersinia pseudotuberculosis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
xerDrecomb_XerD- tyrosine recombinase XerD (299 aa)    
Predicted Functional Partners:
recJ
SsDNA exonuclease RecJ; recJ- single-stranded-DNA-specific exonuclease RecJ (577 aa)
 
   
  0.907
dsbC
Thiol-disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (238 aa)
 
        0.896
ftsK
annotation not available (1309 aa)
 
 
 
  0.862
lysS
lysS_bact- lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family (505 aa)
          0.714
isiB
Flavodoxin; Low-potential electron donor to a number of redox enzymes (172 aa)
              0.687
xerC
recomb_XerC- tyrosine recombinase XerC; Belongs to the ’phage’ integrase family. XerC subfamily (303 aa)
   
 
0.682
recB
RecBCD enzyme subunit RecB; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3’ direction. Cuts ssDNA a few nucleotides 3’ to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3’-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holo [...] (1220 aa)
   
   
  0.668
DJ40_431
annotation not available (335 aa)
 
   
  0.645
cmk
Cmk- cytidylate kinase; Belongs to the cytidylate kinase family. Type 1 subfamily (230 aa)
         
  0.643
nrdB
annotation not available (376 aa)
           
  0.634
Your Current Organism:
Yersinia pseudotuberculosis
NCBI taxonomy Id: 633
Other names: ATCC 29833, Bacillus pseudotuberkulosis, Bacterium pseudotuberculosis, CCUG 5855, CIP 55.85, DSM 8992, NCTC 10275, Pasteurella pseudotuberculosis, Shigella pseudotuberculosis, Y. pseudotuberculosis, Yersinia pseudotuberculosis
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