STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET48453.1Lytic transglycosylase, catalytic. (109 aa)    
Predicted Functional Partners:
EET46560.1
Transglycosylase SLT domain protein.
 
     0.913
EET46467.1
Hypothetical protein; Identified by Glimmer3; putative.
  
     0.733
gatB
aspartyl/glutamyl-tRNA; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.590
EET47297.1
Conserved hypothetical protein.
 
    0.520
EET46348.1
Conserved hypothetical protein.
  
     0.507
EET49284.1
Salicylate 1-monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
       0.495
EET49282.1
Lipocalin family protein.
  
     0.486
EET46486.1
Flagellum-specific ATP synthase; Identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026.
  
  
 0.474
EET47740.1
Membrane protein, putative.
  
     0.468
EET46256.1
Flagellar hook-basal body protein FliE.
  
    0.468
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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