STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47647.1Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family. (982 aa)    
Predicted Functional Partners:
EET47593.1
Sarcosine oxidase, delta subunit; Identified by match to protein family HMM PF04267.
 
 0.999
EET49286.1
Sarcosine oxidase, gamma subunit; Identified by match to protein family HMM PF04268.
 
 0.998
EET48977.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.998
EET46665.1
Sarcosine oxidase, delta subunit, heterotetrameric; Identified by match to protein family HMM PF04267.
 
 0.997
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 0.997
EET47191.1
Sarcosine oxidase subunit delta; Identified by match to protein family HMM PF04267.
 
 0.997
EET49031.1
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
 
 0.993
EET46430.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.992
EET49297.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.992
EET48542.1
Sarcosine oxidase, gamma subunit.
  
 0.989
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.