STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMP1BCharged multivesicular body protein 1b. (200 aa)    
Predicted Functional Partners:
Vps4a
Vacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family.
   
 0.995
VTA1
Vacuolar protein sorting-associated protein VTA1-like protein.
    
 0.995
chmp2a
Charged multivesicular body protein 2a.
   
0.995
chmp2b
Charged multivesicular body protein 2b.
   
 0.963
IST1-2
IST1-like protein.
    
 
 0.959
chmp4b
Charged multivesicular body protein 4b.
    
 0.936
T01_11566
Charged multivesicular body protein 5.
   
 
 0.929
IST1
IST1-like protein.
    
 
 0.847
Fignl1
Fidgetin-like protein 1.
    
 
 0.714
CHMP6
Charged multivesicular body protein 6.
   
 0.698
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.