STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CACVoltage-dependent calcium channel type A subunit alpha-1. (1887 aa)    
Predicted Functional Partners:
unc-79
Uncoordinated protein 79.
   
 0.992
Def8
Voltage-dependent calcium channel unc-36.
   
 0.909
CACNB2
Voltage-dependent L-type calcium channel subunit beta-2.
   
 0.790
Cacnb3
Voltage-dependent L-type calcium channel subunit beta-2.
   
 0.790
Cacna1h
Voltage-dependent T-type calcium channel subunit alpha-1H.
  
0.752
Wdr35
WD repeat-containing protein 35.
    
 0.725
ift122
Intraflagellar transport protein-like protein.
   
 0.708
Wdr19
WD repeat-containing protein 19.
    
 0.696
IFT140
Intraflagellar transport protein-like protein.
    
 0.681
unc-10
Rab-3-interacting molecule unc-10.
   
 0.618
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.