STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T01_5528Uncharacterized protein. (269 aa)    
Predicted Functional Partners:
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
    
 
 0.801
K07C5.6
Pre-mRNA-splicing factor SLU7.
   
 
 0.741
cwc22
Pre-mRNA-splicing factor CWC22-like protein.
    
 0.648
Prpf8-2
Pre-mRNA-processing-splicing factor 8.
    
 
 0.643
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.643
T01_14401
Protein FAM50-like protein.
    
  0.633
Ccdc12
Coiled-coil domain-containing protein 12.
   
 
  0.628
prkrip1
PRKR-interacting protein 1-like protein.
   
 
 0.626
cyn-4
Peptidyl-prolyl cis-trans isomerase 4.
   
 0.623
Ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.619
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.