STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Thoc6THO complex subunit 6-like protein. (332 aa)    
Predicted Functional Partners:
Thoc1
THO complex subunit 1.
    
 0.997
Thoc3
THO complex subunit 3.
   
 0.975
THOC2
THO complex subunit 2.
    
 0.969
Vars2
Spliceosome RNA helicase DDX39B.
   
 0.916
alyref-b
THO complex subunit 4-B.
   
 0.809
K07C5.6
Pre-mRNA-splicing factor SLU7.
     
 0.639
Eif4a3
Eukaryotic initiation factor 4A-III.
    
 0.638
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
     
 0.622
Nxf1
Nuclear RNA export factor 1.
     
 0.591
cpsf5
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
     
 0.588
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.