STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp36Ubiquitin carboxyl-terminal hydrolase. (866 aa)    
Predicted Functional Partners:
Sras
CAAX prenyl protease 2.
     
 0.636
Sras-2
CAAX prenyl protease 2.
     
 0.636
TRIP12
E3 ubiquitin-protein ligase TRIP12.
      
 0.581
cdc25-1-b
M-phase inducer phosphatase 1-B.
   
 0.579
cdc25-1-b-2
M-phase inducer phosphatase 1-B.
   
 0.579
Cnrip1
Zinc finger protein.
   
  
 0.411
Usp5
Ubiquitin carboxyl-terminal hydrolase.
      
 0.410
otud6b
OTU domain-containing protein 6B.
      
 0.403
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.