STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H6Zinc finger CCCH domain-containing protein 6. (1081 aa)    
Predicted Functional Partners:
ssu72
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.903
Cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.901
WDR33
Pre-mRNA 3' end processing protein WDR33.
   
 0.900
Fip1l1
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.899
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.891
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.889
Papolg
Poly(A) polymerase gamma.
   
 0.887
cpsf5
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 0.876
Gsc
Homeobox protein goosecoid.
    
   0.876
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 0.816
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.