STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPIDPeptidyl-prolyl cis-trans isomerase D. (385 aa)    
Predicted Functional Partners:
Hsp83
Heat shock protein 83.
  
 0.890
AHSA1
Activator of 90 kDa heat shock protein ATPase-like protein 1.
   
 
 0.862
DNAJB1
DnaJ-like protein subfamily B member 1.
  
 
 0.820
STIP1
Stress-induced-phosphoprotein 1.
  
 0.791
Prpf19
Pre-mRNA-processing factor 19.
   
 0.762
Tsc1
Hamartin.
  
 0.756
Tsc1-2
Hamartin.
  
 0.756
tm2d2
Heat shock protein 75 kDa, mitochondrial.
  
 0.756
Cdc40
Pre-mRNA-processing factor 17.
   
 0.755
XAB2
Pre-mRNA-splicing factor SYF1.
    
 0.753
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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