STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH06136.1Modulator of FtsH protease; Belongs to the BI1 family. (221 aa)    
Predicted Functional Partners:
SHH06248.1
tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system.
     
 0.670
SHH06165.1
tRNA 2-thiouridine synthesizing protein D.
       0.643
SHH06185.1
tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family.
       0.643
htpX
Heat shock protein HtpX; Belongs to the peptidase M48B family.
  
  
 0.606
SHH06218.1
DsrH like protein.
       0.594
SHG41292.1
Membrane protein required for colicin V production.
  
    0.576
msrB
Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.504
surA
Peptidyl-prolyl cis-trans isomerase SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
  
 
   0.461
SHF85446.1
BlaR1 peptidase M56.
   
  
 0.418
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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