Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argC | hisA | mru_1719 | mru_1717 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Phosphoribosylformimino-5- aminoimidazole carboxamide ribotide isomerase HisA. | 0.730 |
argC | mru_1526 | mru_1719 | mru_1526 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Nucleotidyl transferase. | 0.400 |
argC | mru_1720 | mru_1719 | mru_1720 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Flavodoxin. | 0.727 |
argC | ribL | mru_1719 | mru_1718 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Glycerol-3-phosphate cytidylyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.759 |
hisA | argC | mru_1717 | mru_1719 | Phosphoribosylformimino-5- aminoimidazole carboxamide ribotide isomerase HisA. | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.730 |
hisA | mru_1720 | mru_1717 | mru_1720 | Phosphoribosylformimino-5- aminoimidazole carboxamide ribotide isomerase HisA. | Flavodoxin. | 0.537 |
hisA | ribL | mru_1717 | mru_1718 | Phosphoribosylformimino-5- aminoimidazole carboxamide ribotide isomerase HisA. | Glycerol-3-phosphate cytidylyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.776 |
mru_0414 | ribH | mru_0414 | mru_0098 | Aminotransferase class V family. | 6,7-dimethyl-8- ribityllumazine synthase RibH; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.501 |
mru_0414 | ribL | mru_0414 | mru_1718 | Aminotransferase class V family. | Glycerol-3-phosphate cytidylyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.621 |
mru_0726 | mru_1526 | mru_0726 | mru_1526 | Hypothetical protein. | Nucleotidyl transferase. | 0.735 |
mru_0726 | ribL | mru_0726 | mru_1718 | Hypothetical protein. | Glycerol-3-phosphate cytidylyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.734 |
mru_1078 | mru_1526 | mru_1078 | mru_1526 | Glycosyl transferase GT2 family/CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. | Nucleotidyl transferase. | 0.893 |
mru_1078 | neuA | mru_1078 | mru_1876 | Glycosyl transferase GT2 family/CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. | CMP-N-acetylneuraminic acid synthetase NeuA. | 0.960 |
mru_1078 | ribL | mru_1078 | mru_1718 | Glycosyl transferase GT2 family/CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. | Glycerol-3-phosphate cytidylyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.563 |
mru_1526 | argC | mru_1526 | mru_1719 | Nucleotidyl transferase. | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.400 |
mru_1526 | mru_0726 | mru_1526 | mru_0726 | Nucleotidyl transferase. | Hypothetical protein. | 0.735 |
mru_1526 | mru_1078 | mru_1526 | mru_1078 | Nucleotidyl transferase. | Glycosyl transferase GT2 family/CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase. | 0.893 |
mru_1526 | neuA | mru_1526 | mru_1876 | Nucleotidyl transferase. | CMP-N-acetylneuraminic acid synthetase NeuA. | 0.999 |
mru_1526 | ribL | mru_1526 | mru_1718 | Nucleotidyl transferase. | Glycerol-3-phosphate cytidylyltransferase; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme. | 0.694 |
mru_1720 | argC | mru_1720 | mru_1719 | Flavodoxin. | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.727 |
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