Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ef1b | psmA | mru_0520 | mru_1357 | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.597 |
ef1b | psmB | mru_0520 | mru_1977 | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.586 |
ef1b | rpl40e | mru_0520 | mru_1100 | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.956 |
mru_0435 | mru_0677 | mru_0435 | mru_0677 | Cell division control protein Cdc48. | Hypothetical protein. | 0.691 |
mru_0435 | mru_1168 | mru_0435 | mru_1168 | Cell division control protein Cdc48. | Serine/threonine protein kinase with TPR repeats. | 0.937 |
mru_0435 | pan | mru_0435 | mru_1448 | Cell division control protein Cdc48. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.692 |
mru_0435 | psmA | mru_0435 | mru_1357 | Cell division control protein Cdc48. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.764 |
mru_0435 | psmB | mru_0435 | mru_1977 | Cell division control protein Cdc48. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.780 |
mru_0435 | rpl40e | mru_0435 | mru_1100 | Cell division control protein Cdc48. | Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.864 |
mru_0677 | mru_0435 | mru_0677 | mru_0435 | Hypothetical protein. | Cell division control protein Cdc48. | 0.691 |
mru_0677 | mru_1168 | mru_0677 | mru_1168 | Hypothetical protein. | Serine/threonine protein kinase with TPR repeats. | 0.886 |
mru_0677 | mru_1860 | mru_0677 | mru_1860 | Hypothetical protein. | ATPase. | 0.691 |
mru_0677 | pan | mru_0677 | mru_1448 | Hypothetical protein. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.999 |
mru_0677 | psmA | mru_0677 | mru_1357 | Hypothetical protein. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.921 |
mru_0677 | psmB | mru_0677 | mru_1977 | Hypothetical protein. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.921 |
mru_0677 | rpl40e | mru_0677 | mru_1100 | Hypothetical protein. | Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.989 |
mru_1168 | mru_0435 | mru_1168 | mru_0435 | Serine/threonine protein kinase with TPR repeats. | Cell division control protein Cdc48. | 0.937 |
mru_1168 | mru_0677 | mru_1168 | mru_0677 | Serine/threonine protein kinase with TPR repeats. | Hypothetical protein. | 0.886 |
mru_1168 | mru_1860 | mru_1168 | mru_1860 | Serine/threonine protein kinase with TPR repeats. | ATPase. | 0.937 |
mru_1168 | nifS | mru_1168 | mru_1568 | Serine/threonine protein kinase with TPR repeats. | Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.517 |
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