STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xytBPutative sugar ABC transporter, periplasmic protein; silverDB:661Eb02496. (309 aa)    
Predicted Functional Partners:
xytE
Putative sugar ABC transporter, permease protein; silverDB:661Eb02499; Belongs to the binding-protein-dependent transport system permease family.
 0.984
xytD
Putative sugar ABC transporter, ATP-binding protein; silverDB:661Eb02498.
 
 0.967
xytC
Putative uncharacterized protein XytC; silverDB:661Eb02497.
 
    0.897
rbsC
Ribose transport permease system protein; silverDB:661Eb00021; Belongs to the binding-protein-dependent transport system permease family.
 
 0.825
rbsC-2
Probable sugar ABC transporter, permease protein; silverDB:661Eb02905; Belongs to the binding-protein-dependent transport system permease family.
 
 0.822
EbC_31230
Ribose ABC transporter, permease; silverDB:661Eb04131; Belongs to the binding-protein-dependent transport system permease family.
 
 0.821
EbC_31220
Ribose ABC transporter, ATPase subunit; silverDB:661Eb04129; Belongs to the binding-protein-dependent transport system permease family.
 
 0.819
EbC_20820
ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein; silverDB:661Eb02801; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.815
EbC_03250
Putative ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; silverDB:661Eb00422; Belongs to the binding-protein-dependent transport system permease family.
 
 0.814
EbC_20810
ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein; silverDB:661Eb02799; Belongs to the binding-protein-dependent transport system permease family.
 
   0.814
Your Current Organism:
Erwinia billingiae
NCBI taxonomy Id: 634500
Other names: E. billingiae Eb661, Erwinia billingiae Eb661, Erwinia billingiae str. Eb661, Erwinia billingiae strain Eb661
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