STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfQABC transporter periplasmic-binding protein YtfQ; silverDB:661Eb02635. (318 aa)    
Predicted Functional Partners:
EbC_19570
Putative sugar ABC transporter, permease protein; silverDB:661Eb02639; Belongs to the binding-protein-dependent transport system permease family.
 0.993
EbC_19550
Putative sugar ABC transporter, ATP-binding protein; silverDB:661Eb02636.
 
 0.991
EbC_19560
Putative sugar ABC transporter, permease protein; silverDB:661Eb02637; Belongs to the binding-protein-dependent transport system permease family.
 0.987
barA
Signal transduction histidine-protein kinase; silverDB:661Eb04639.
  
 
 0.796
EbC_18050
Sensor hybrid histidine kinase; silverDB:661Eb02427.
  
 
 0.738
arcB
Aerobic respiration control sensor protein; silverDB:661Eb05300.
  
 
 0.738
EbC_13180
Hpt sensor hybrid histidine kinase; silverDB:661Eb01775.
   
 
 0.726
EbC_18030
Sensor protein; silverDB:661Eb02425.
   
 
 0.726
rcsC
Capsular synthesis regulator component C; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
  
 
 0.685
EbC_32950
D-xylose ABC transporter, permease protein; silverDB:661Eb04323; Belongs to the binding-protein-dependent transport system permease family.
  
 0.653
Your Current Organism:
Erwinia billingiae
NCBI taxonomy Id: 634500
Other names: E. billingiae Eb661, Erwinia billingiae Eb661, Erwinia billingiae str. Eb661, Erwinia billingiae strain Eb661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.