STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadBAlanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (356 aa)    
Predicted Functional Partners:
dadA
D-amino acid dehydrogenase, small subunit; Oxidative deamination of D-amino acids.
  
  
 0.983
mra
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.960
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.950
asdA
Aspartate decarboxylase; silverDB:661Eb00737.
 
  
 0.840
EbC_30810
Aminotransferase; silverDB:661Eb04075.
    
 0.818
EbC_28290
FAD dependent oxidoreductase; silverDB:661Eb03756.
  
  
 0.696
EbC_36880
FAD dependent oxidoreductase; silverDB:661Eb04832.
  
  
 0.696
EbC_39020
Fructosyl-amino acid oxidase; silverDB:661Eb05108.
  
  
 0.696
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
 
   
 0.639
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.630
Your Current Organism:
Erwinia billingiae
NCBI taxonomy Id: 634500
Other names: E. billingiae Eb661, Erwinia billingiae Eb661, Erwinia billingiae str. Eb661, Erwinia billingiae strain Eb661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.